Fast accurate evaluation of protein solvent exposure
نویسندگان
چکیده
منابع مشابه
Fast accurate evaluation of protein solvent exposure.
Protein solvation energies are often taken to be proportional to solvent-accessible surface areas. Computation of these areas is numerically demanding and may become a bottleneck for folding and design applications. Fast graph-based methods, such as dead-end elimination (DEE), become possible if all energies, including solvation energies, are expressed as single-residue and pair-residue terms. ...
متن کاملFast and Accurate Evaluation of Memory Performance Upper Bound
In many cases compiler based optimizations for memory performance tuning are too limited and programmers have to resort to manual optimization techniques However this process is tedious and time consuming especially since there is no indication on when the process can stop i e when optimal memory performance has been achieved or su ciently approached Architecture simulators can provide such inf...
متن کاملAccurate, Validated and Fast Evaluation of Bézier Tensor Product Surfaces
This paper proposes a compensated algorithm to evaluate Bézier tensor product surfaces with floating-point coefficients and coordinates. This algorithm is based on the application of error-free transformations to improve the traditional de Casteljau tensor product algorithm. This compensated algorithm extends the compensated de Casteljau algorithm for the evaluation of a Bézier curve to the cas...
متن کاملDrive-Thru: Fast, Accurate Evaluation of Storage Power Management
Running traces of realistic user activity is an important step in evaluating storage power management. Unfortunately, existing methodologies that replay traces as fast as possible on a live system cannot be used to evaluate timeout-based power management policies. Other methodologies that slow down replay to preserve the recorded delays between operations are too timeconsuming. We propose a hyb...
متن کاملFast or Accurate? - A Comparative Evaluation of PoS Tagging Models
We perform a comparison of 22 PoS tagger models for English and German offered by 9 different implementations. By evaluating on a mix of corpora from different domains, we simulate a black-box usage where researchers select a tagger (because of popularity, ease of use, etc.) and apply it to all sorts of text. We find the expected trade-off between fast models with relatively low accuracy and sl...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: Proteins: Structure, Function, and Bioinformatics
سال: 2004
ISSN: 0887-3585
DOI: 10.1002/prot.20191